Date: Wed, 04 Jun 2008 12:04:48 -1000 From: Glen Petitpas To: Jun-Hui Zhao Cc: Glen Petitpas , Bob Wilson , Ram Subject: Re: smalod with wide channels on rtdc2 Hi It seems to have worked in the pool3 directory. It is unclear to me what the difference between disks makes. Cheers Glen Jun-Hui Zhao wrote: > Hi Glen, > Please try cd /pool3/gpetitpa, the "real home directory" > Alice set for you. > Run smalod under /pool3/gpetitpa instead of under /home/gpetitpa > Please let me know if the problem persists. > Jun-Hui > > On Wed, 4 Jun 2008, Glen Petitpas wrote: > > > Hi > > > > I just tried /opt/miriad/miriad_cvs/MIRRC.linux and > > had the same error. As I mentioned, I have nothing > > in that account that would be different configuration > > than anyone else with a new account. > > > > I include the complete log-in session (with some smalod > > text deleted) below. > > > > G > > > > ---------------------------------------------------------------------------- > > -------------- > > mars:gpetitpa[~] 2001 % ssh rtdc2 > > gpetitpa@rtdc2's password: > > Last login: Wed Jun 4 15:24:15 2008 from mars.cfa.harvard.edu > > [gpetitpa@rtdc2 ~]$ ls -la > > total 8 > > drwxr-xr-x 2 gpetitpa other 4096 Jun 4 17:38 . > > drwxr-xr-x 5 root root 0 Jun 4 17:36 .. > > -rw------- 1 gpetitpa other 472 Jun 4 17:38 .Xauthority > > [gpetitpa@rtdc2 ~]$ source /opt/miriad/miriad_cvs/MIRRC.linux > > > > MIRIAD version 4.0.5 updatede & installed on Aug 6, 2007 [CVS] loaded > > from MIR=/opt/miriad/miriad_cvs > > Optimized for telescope=sma > > > > [gpetitpa@rtdc2 ~]$ smalod in=/data/sma/science/mir_data/080323_04:49:48 > > rxif=-1sideband=0 out=widetest > > SmaLod: version 3.0beta 11-feb-08 > > ### Warning [smalod]: Reading antenna positions from ASCII file antennas: > > ### Warning [smalod]: Number of antennas exceeded the limit 8. > > ... > > s23 128 => s23 128 > > s24 128 => s24 128 > > Done with data conversion from mir to miriad! > > Real time used =65.000000 sec. > > UVWIDE: Writing visibilities to: widetest_rxl.lsb.wide > > Creating 24 new wideband ... > > rm: cannot remove directory `widetest_rxl.lsb': Directory not empty > > output file = widetest_rxl.lsb > > [gpetitpa@rtdc2 ~]$ ls -la > > total 16 > > drwxr-xr-x 4 gpetitpa other 4096 Jun 4 17:43 . > > drwxr-xr-x 5 root root 0 Jun 4 17:41 .. > > -rw-r--r-- 1 gpetitpa other 0 Jun 4 17:41 ERRreport.log > > drwxr-xr-x 2 gpetitpa other 4096 Jun 4 17:43 widetest_rxl.lsb > > drwxr-xr-x 2 gpetitpa other 4096 Jun 4 17:43 widetest_rxl.lsb.wide > > -rw------- 1 gpetitpa other 472 Jun 4 17:38 .Xauthority > > [gpetitpa@rtdc2 ~]$ du -h > > 4.0K ./widetest_rxl.lsb > > 326M ./widetest_rxl.lsb.wide > > 326M . > > [gpetitpa@rtdc2 ~]$ > > > > > > > > ------------------- > > Jun-Hui Zhao wrote: > > > Hi Glen: > > > Thanks. I repeat your problem with 'source > > > /home/miriad/miriad_cvs/MIRRC.linux'. > > > Instead of 'source /home/miriad/miriad_cvs/MIRRC.linux', > > > please try 'source /opt/miriad/miriad_cvs/MIRRC.linux'. > > > Please see http://sma-www.cfa.harvard.edu/miriadWWW/manuals/where.html > > > for RG setup (did by Shoshana). The problem should be fixed automatically > > > if we follow Shoshana's setup. > > > > > > There is no difference between /home/miriad/miriad_cvs/MIRRC.linux and > > > /opt/miriad/miriad_cvs/MIRRC.linux (exactly the same) but after source, > > > apparently, the system generates different env. which caused the problem. > > > > > > I think this is our local problem. I will not bother Peter Teuben > > > to change his code. > > > > > > Please let us know if any further problems. > > > > > > Jun-Hui > > > > > > > > > > > > On Wed, 4 Jun 2008, Glen Petitpas wrote: > > > > > > > Hi > > > > > > > > I mentioned this in my original email. I was using the installation > > > > setup > > > > in /home/miriad/miriad_cvs/MIRRC.linux > > > > > > > > Specifically, I logged in, typed > > > > > source /home/miriad/miriad_cvs/MIRRC.linux > > > > followed by > > > > > smalod in=/data/sma/science/mir_data/080323_04:49:48 rxif=-1 > > > > sideband=0 out=widetest > > > > > > > > and I got the errors I included in the original email about not being > > > > able to remove a file. > > > > > > > > Cheers > > > > Glen > > > > > > > > > > > > Jun-Hui Zhao wrote: > > > > > Hi Glen: > > > > > > > > > > We asked Alice to create a raw account with the exact > > > > > env setting you had in order to repeat the problem. > > > > > With the command line you sent us, > > > > > > > > > > mailhot@rtdc2 mytest]$ smalod > > > > > in=/data/sma/science/mir_data/080323_04:49:48 > > > > > rxif=-1 sideband=0 out=widetest > > > > > > > > > > I got a response from the system: 'smalod: Command not found.' > > > > > > > > > > Apparently, one must have set up MIRIAD environment before running > > > > > a Miriad task. Would you please let us know how did you set up > > > > > the MIRIAD environment before executing smalod? We need to make > > > > > sure that the bug is not due to our local before we can ask Peter > > > > > to change his code. > > > > > > > > > > Jun-Hui > > > > > > > > > > > > > > > > > > > > On Wed, 4 Jun 2008, Glen Petitpas wrote: > > > > > > > > > > > Hi > > > > > > > > > > > > I used my gpetitpa account which was just set up on > > > > > > the RG machines last week and contains absolutely > > > > > > no config files except for the default ones for a new > > > > > > linux account. I have not added any custom alias' and > > > > > > I do not even have a .cshrc file in that account. > > > > > > > > > > > > I hope you will receive this email. I am afraid that there > > > > > > is a lot of email going missing these days. I do not > > > > > > trust the new spam filters. > > > > > > > > > > > > Cheers > > > > > > Glen > > > > > > > > > > > > Jun-Hui Zhao wrote: > > > > > > > Thanks Bob, > > > > > > > I just did a test on rtdc2. The test ran smoothly. > > > > > > > /pool1/miriad/widebandM/recomH30demo.csh on rtdc2 > > > > > > > > > > > > > > > > > > > > > The system setup here does not generate the problem. > > > > > > > There might be some confusion in one's personal alias setup. > > > > > > > > > > > > > > Glen: Which account you used for this test? I can help > > > > > > > look into the enevirnment setup to find out what cause this > > > > > > > problem. > > > > > > > BTW, somehow, I didn't receive your yesterday's email that is > > > > > > > attached to Bob's email. > > > > > > > > > > > > > > I did receive several emails from Vivien Chen > > > > > > > > > > > > > > in last a few days regarding the wideband testing. > > > > > > > > > > > > > > Jun-Hui > > > > > > > > > > > > > > On Wed, 4 Jun 2008, Robert Wilson wrote: > > > > > > > > > > > > > > > ounds to me as if changing the removal command from rmdir to > > > > > > > > 'rm -r' would fix it. > > > > > > > > > > > > > > > > Bob > > > > > > > > > > > > > > > > > > > > > > > > On Tue, 3 Jun 2008, Glen Petitpas wrote: > > > > > > > > > > > > > > > > > Hi Bob and Jun-Hui > > > > > > > > > > > > > > > > > > I ran the following command on rtdc2 > > > > > > > > > smalod in=/data/sma/science/mir_data/080323_04:49:48 rxif=-1 > > > > > > > > > sideband=0 > > > > > > > > > out=widetest > > > > > > > > > and received the same errors "Directory not empty" errors > > > > > > > > > causing the > > > > > > > > > program to halt prematurely as I did on the Hilo machines. > > > > > > > > > > > > > > > > > > I was using the installation setup in > > > > > > > > > /home/miriad/miriad_cvs/MIRRC.linux > > > > > > > > > > > > > > > > > > Complete output below. > > > > > > > > > > > > > > > > > > Cheers > > > > > > > > > Glen > > > > > > > > > ------------------------- > > > > > > > > > smalod in=/data/sma/science/mir_data/080323_04:49:48 rxif=-1 > > > > > > > > > sideband=0 > > > > > > > > > out=widetest > > > > > > > > > SmaLod: version 3.0beta 11-feb-08 > > > > > > > > > ### Warning [smalod]: Reading antenna positions from ASCII > > > > > > > > > file antennas: > > > > > > > > > ### Warning [smalod]: Number of antennas exceeded the limit > > > > > > > > > 8. > > > > > > > > > 1 -17.915279 -59.558134 30.069008 > > > > > > > > > 2 5.228588 -20.076522 -14.843520 > > > > > > > > > 3 -0.506908 -25.153460 1.280718 > > > > > > > > > 4 -6.400324 -68.001754 3.637705 > > > > > > > > > 5 -5.702448 -18.984177 15.611287 > > > > > > > > > 6 0.000000 0.000000 0.000000 > > > > > > > > > 7 11.739529 -53.664693 -40.723535 > > > > > > > > > 8 4.443050 -63.873647 -21.837546 > > > > > > > > > 9 56.922679 54.469104 -143.193612 > > > > > > > > > 10 58.852479 212.382187 -186.578424 > > > > > > > > > > > > > > > > > > Loading standard SMA data ... > > > > > > > > > > > > > > > > > > User's input vSource = 0.000000 km/s > > > > > > > > > Processing file /data/sma/science/mir_data/080323_04:49:48/ > > > > > > > > > Found file /data/sma/science/mir_data/080323_04:49:48/in_read > > > > > > > > > Found file /data/sma/science/mir_data/080323_04:49:48/bl_read > > > > > > > > > Found file /data/sma/science/mir_data/080323_04:49:48/sp_read > > > > > > > > > Found file > > > > > > > > > /data/sma/science/mir_data/080323_04:49:48/codes_read > > > > > > > > > Found file /data/sma/science/mir_data/080323_04:49:48/eng_read > > > > > > > > > Found file /data/sma/science/mir_data/080323_04:49:48/sch_read > > > > > > > > > Found file > > > > > > > > > /data/sma/science/mir_data/080323_04:49:48/projectInfo > > > > > > > > > Observer: Glen Petitpas > > > > > > > > > ******************************* > > > > > > > > > * Observing Date: 2008 Mar 23 * > > > > > > > > > ******************************* > > > > > > > > > FINISHED READING IN HEADERS (endian-swapped) > > > > > > > > > NUMBER OF SIDEBANDS =2 > > > > > > > > > NUMBER OF RECEIVERS =1 > > > > > > > > > rx1->340 > > > > > > > > > Processing LSB > > > > > > > > > to load rx->340 visdata > > > > > > > > > mirRead: number of antenna =7 are found. > > > > > > > > > FINISHED READING BL HEADERS (endian-swapped) > > > > > > > > > NUMBER OF ANTENNAS =8 > > > > > > > > > Geocentrical coordinates of antennas (m), reference antenna=6 > > > > > > > > > ANT x y z AN1 -17.9153 -59.5581 30.0690 > > > > > > > > > ANT x y z AN2 5.2286 -20.0765 -14.8435 > > > > > > > > > ANT x y z AN3 -0.5069 -25.1535 1.2807 > > > > > > > > > ANT x y z AN4 -6.4003 -68.0018 3.6377 > > > > > > > > > ANT x y z AN5 -5.7024 -18.9842 15.6113 > > > > > > > > > ANT x y z AN6 0.0000 0.0000 0.0000 > > > > > > > > > ANT x y z AN7 11.7395 -53.6647 -40.7235 > > > > > > > > > ANT x y z AN8 4.4431 -63.8736 -21.8375 > > > > > > > > > Miriad coordinates of antennas (nanosecs), reference antenna=6 > > > > > > > > > ANT x y x AN1 -59.7589 -198.6646 100.2994 > > > > > > > > > ANT x y x AN2 17.4407 -66.9681 -49.5127 > > > > > > > > > ANT x y x AN3 -1.6909 -83.9029 4.2720 > > > > > > > > > ANT x y x AN4 -21.3492 -226.8294 12.1341 > > > > > > > > > ANT x y x AN5 -19.0213 -63.3244 52.0736 > > > > > > > > > ANT x y x AN6 0.0000 0.0000 0.0000 > > > > > > > > > ANT x y x AN7 39.1589 -179.0061 -135.8391 > > > > > > > > > ANT x y x AN8 14.8204 -213.0596 -72.8422 > > > > > > > > > FINISHED READING CD HEADERS (endian-swapped) > > > > > > > > > Actual numberSpectra=25 end_iband=24 > > > > > > > > > > > > > > > > > > number of non-empty Spectra = 25 > > > > > > > > > FINISHED READING SP HEADERS (endian-swapped) > > > > > > > > > Decoded baseline-based Tsys > > > > > > > > > Decoded the Doppler velocity > > > > > > > > > here we are! > > > > > > > > > source: 3c84 id= 1 RA=03:19:48.1602 DEC= > > > > > > > > > 41:30:42.1051 > > > > > > > > > source: saturn id= 2 RA=10:22:47.6914 DEC= > > > > > > > > > 12:06:19.2892 > > > > > > > > > source: titan id= 3 RA=10:22:59.8691 DEC= > > > > > > > > > 12:06:50.0304 > > > > > > > > > source: 1215-175 id= 4 RA=12:15:46.7537 > > > > > > > > > DEC=-17:31:45.4001 > > > > > > > > > source: antenna_1 id= 5 RA=12:01:53.4510 > > > > > > > > > DEC=-18:53:12.4004 > > > > > > > > > source: antenna_2 id= 6 RA=12:01:54.6114 > > > > > > > > > DEC=-18:53:07.9990 > > > > > > > > > source: antenna_3 id= 7 RA=12:01:55.0509 > > > > > > > > > DEC=-18:52:43.9595 > > > > > > > > > source: 3c279 id= 8 RA=12:56:11.1651 DEC= > > > > > > > > > -5:47:21.5245 > > > > > > > > > source: antenna_4 id= 9 RA=12:01:55.4594 > > > > > > > > > DEC=-18:52:55.9827 > > > > > > > > > source: antenna_5 id=10 RA=12:01:53.0116 > > > > > > > > > DEC=-18:52:01.6827 > > > > > > > > > source: callisto id=11 RA=19:22:57.7473 > > > > > > > > > DEC=-22:01:16.6914 > > > > > > > > > source: target id=12 RA=00:00:00.0000 DEC= > > > > > > > > > 0:00:00.0000 > > > > > > > > > LSB only > > > > > > > > > #Baselines=21 #Spectra=24 #Sidebands=2 #Receivers=1 > > > > > > > > > set= 1 ints= 1 inhid= 1 time(UTC)= 0d04:50:01.9 int= > > > > > > > > > 29.6 percent=000 > > > > > > > > > set= 100 ints= 100 inhid= 100 time(UTC)= 0d05:39:00.4 int= > > > > > > > > > 29.6 percent=008 > > > > > > > > > set= 200 ints= 200 inhid= 200 time(UTC)= 0d06:28:28.7 int= > > > > > > > > > 29.6 percent=016 > > > > > > > > > set= 300 ints= 300 inhid= 300 time(UTC)= 0d07:17:57.0 int= > > > > > > > > > 29.6 percent=024 > > > > > > > > > set= 400 ints= 400 inhid= 400 time(UTC)= 0d08:07:25.3 int= > > > > > > > > > 29.6 percent=031 > > > > > > > > > set= 500 ints= 500 inhid= 500 time(UTC)= 0d08:56:53.5 int= > > > > > > > > > 29.6 percent=039 > > > > > > > > > set= 600 ints= 600 inhid= 600 time(UTC)= 0d09:46:21.8 int= > > > > > > > > > 29.6 percent=047 > > > > > > > > > set= 700 ints= 700 inhid= 700 time(UTC)= 0d10:35:50.1 int= > > > > > > > > > 29.6 percent=055 > > > > > > > > > set= 800 ints= 800 inhid= 800 time(UTC)= 0d11:25:18.4 int= > > > > > > > > > 29.6 percent=063 > > > > > > > > > 29.6 percent=071 > > > > > > > > > set=1000 ints=1000 inhid=1000 time(UTC)= 0d13:04:14.9 int= > > > > > > > > > 29.6 percent=079 > > > > > > > > > set=1100 ints=1100 inhid=1100 time(UTC)= 0d13:53:43.2 int= > > > > > > > > > 29.6 percent=087 > > > > > > > > > set=1200 ints=1200 inhid=1200 time(UTC)= 0d14:43:11.5 int= > > > > > > > > > 29.6 percent=095 > > > > > > > > > set=1253 ints=1253 inhid=1253 time(UTC)= 0d15:09:24.7 int= > > > > > > > > > 29.6 > > > > > > > > > percent=100 > > > > > > > > > skipped 0 integration scans on `target&unknown' > > > > > > > > > vis spectra from the original correlator configuration: > > > > > > > > > (starting at integrations=1) > > > > > > > > > input output > > > > > > > > > s01 128 => s01 128 > > > > > > > > > s02 128 => s02 128 > > > > > > > > > s03 128 => s03 128 > > > > > > > > > s04 128 => s04 128 > > > > > > > > > s05 128 => s05 128 > > > > > > > > > s06 128 => s06 128 > > > > > > > > > s07 128 => s07 128 > > > > > > > > > s08 128 => s08 128 > > > > > > > > > s09 128 => s09 128 > > > > > > > > > s10 128 => s10 128 > > > > > > > > > s11 128 => s11 128 > > > > > > > > > s12 128 => s12 128 > > > > > > > > > s13 128 => s13 128 > > > > > > > > > s14 128 => s14 128 > > > > > > > > > s15 128 => s15 128 > > > > > > > > > s16 128 => s16 128 > > > > > > > > > s17 128 => s17 128 > > > > > > > > > s18 128 => s18 128 > > > > > > > > > s19 128 => s19 128 > > > > > > > > > s20 128 => s20 128 > > > > > > > > > s21 128 => s21 128 > > > > > > > > > s22 128 => s22 128 > > > > > > > > > s23 128 => s23 128 > > > > > > > > > s24 128 => s24 128 > > > > > > > > > Done with data conversion from mir to miriad! > > > > > > > > > Real time used =65.000000 sec. > > > > > > > > > UVWIDE: Writing visibilities to: widetest_rxl.lsb.wide > > > > > > > > > Creating 24 new wideband ... > > > > > > > > > rm: cannot remove directory `widetest_rxl.lsb': Directory not > > > > > > > > > empty > > > > > > > > > output file = widetest_rxl.lsb > > > > > > > > > [gpetitpa@rtdc2 ~/wide_test]$ > > > > > > > > >